{"id":8837,"date":"2024-07-01T15:48:47","date_gmt":"2024-07-01T13:48:47","guid":{"rendered":"https:\/\/www.igmm.cnrs.fr\/8783-2\/"},"modified":"2024-07-19T17:32:15","modified_gmt":"2024-07-19T15:32:15","slug":"8783-2","status":"publish","type":"page","link":"https:\/\/www.igmm.cnrs.fr\/en\/8783-2\/","title":{"rendered":"Available proteins  *"},"content":{"rendered":"<div id=\"pl-8837\"  class=\"panel-layout\" ><div id=\"pg-8837-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-8837-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-8837-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child\" data-index=\"0\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p><img loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-8859 size-full\" src=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172917.jpg\" alt=\"\" width=\"1521\" height=\"465\" srcset=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172917.jpg 1521w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172917-450x138.jpg 450w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172917-1024x313.jpg 1024w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172917-768x235.jpg 768w\" sizes=\"auto, (max-width: 1521px) 100vw, 1521px\" \/><\/p>\n<\/div>\n<\/div><\/div><div id=\"panel-8837-0-0-1\" class=\"so-panel widget widget_sow-editor\" data-index=\"1\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t><h3 class=\"widget-title\">Procedures and quality controls :<\/h3>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<div class=\"siteorigin-widget-tinymce textwidget\">\n<p style=\"text-align: justify;\"><strong><u>TEV protease\u00a0:<\/u><\/strong><\/p>\n<p style=\"text-align: justify;\">The protease was expressed using the 6His-pTEV plasmid (backbone pET28 - map available on request), in the <em>E.coli<\/em> Rosetta pLysS strain. It was then affinity purified on a Ni-NTA column, followed by anion exchange after desalting. The pure fraction was centrifuged to remove aggregates and stored in 50% glycerol.<\/p>\n<p style=\"text-align: justify;\">Its activity was then tested using Cas9-GFP, which features a TEV site between the 6H-MBP tag and Cas9-GFP.<\/p>\n<p style=\"text-align: justify;\">Cleavage efficiency depends on the accessibility of the enzyme binding site and can therefore vary a lot from one substrate to another. We recommend adapting the amount of TEV to the substrate, using a range of decreasing amounts of TEV starting at 1 \u00b5g TEV for 1 \u00b5g substrate.<\/p>\n<p style=\"text-align: justify;\"><strong>Purity analysis (Coomassie \u2013 10% acrylamide)\u00a0 :<\/strong><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-8770\" src=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-01-153340.jpg\" alt=\"\" width=\"250\" height=\"340\" \/><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong><u>Cas9-GFP<\/u><\/strong><\/p>\n<p>The protein was expressed from the 6His-MBP-Cas9-GFP construct (addgene pMJ922) in the <em>E.coli<\/em> Rosetta pLysS strain. It was purified via the following steps:<\/p>\n<ul>\n<li>Affinity on Ni-NTA column<\/li>\n<li>Cation exchange on MonoS column<\/li>\n<li>\u00a0Gel filtration on Superdex 200 column.It was then concentrated (Vivaspin) to 3.7 mg\/mL<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>Purity analysis (Coomassie \u2013 8% acrylamide) :<\/strong> <sub>\u279c <\/sub><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-8855 size-medium aligncenter\" style=\"letter-spacing: 0px;\" src=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172526-450x471.jpg\" alt=\"\" width=\"450\" height=\"471\" srcset=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172526-450x471.jpg 450w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172526.jpg 671w\" sizes=\"auto, (max-width: 450px) 100vw, 450px\" \/><\/p>\n<\/div>\n<\/div>\n<\/div><\/div><div id=\"panel-8837-0-0-2\" class=\"so-panel widget widget_sow-editor panel-last-child\" data-index=\"2\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<h5><strong>Activity analysis : <\/strong><\/h5>\n<p>The activity of Cas9-GFP was tested<em> in vitro<\/em> by comparing it with a commercial Cas9. Two tests were carried out: an efficacy test and a specificity test. The sample produced by the platform gave comparable results to the commercial enzyme.<\/p>\n<p><strong><em>Efficacy :<\/em><\/strong><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-8851 size-full\" src=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172251.jpg\" alt=\"\" width=\"1493\" height=\"616\" srcset=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172251.jpg 1493w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172251-450x186.jpg 450w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172251-1024x422.jpg 1024w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172251-768x317.jpg 768w\" sizes=\"auto, (max-width: 1493px) 100vw, 1493px\" \/><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong><em>Specificity :<\/em><\/strong><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-8849 size-full\" src=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172044.jpg\" alt=\"\" width=\"1228\" height=\"540\" srcset=\"https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172044.jpg 1228w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172044-450x198.jpg 450w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172044-1024x450.jpg 1024w, https:\/\/www.igmm.cnrs.fr\/wp-content\/uploads\/2024\/07\/Capture-decran-2024-07-19-172044-768x338.jpg 768w\" sizes=\"auto, (max-width: 1228px) 100vw, 1228px\" \/><\/p>\n<p>&nbsp;<\/p>\n<\/div>\n<\/div><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>TEV protease\u00a0: The protease was expressed using the 6His-pTEV plasmid (backbone pET28 &#8211; map available on request), in the E.coli Rosetta pLysS strain. It was then affinity purified on a Ni-NTA column, followed by anion exchange after desalting. The pure fraction was centrifuged to remove aggregates and stored in 50% glycerol. Its activity was then tested using Cas9-GFP, which features &hellip; <a href=\"https:\/\/www.igmm.cnrs.fr\/en\/8783-2\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Available proteins  *<\/span><\/a><\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-8837","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/pages\/8837","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/comments?post=8837"}],"version-history":[{"count":14,"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/pages\/8837\/revisions"}],"predecessor-version":[{"id":8863,"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/pages\/8837\/revisions\/8863"}],"wp:attachment":[{"href":"https:\/\/www.igmm.cnrs.fr\/en\/wp-json\/wp\/v2\/media?parent=8837"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}