Publications

Non-Cell Cycle Functions of the CDK Network in Ciliogenesis: Recycling the Cell Cycle Oscillator

Krasinska L, Fisher D.

Bioessays 2018 / vol 40 / pages e1800016

The E3 Ubiquitin Ligases TRIM17 and TRIM41 Modulate α-Synuclein Expression by Regulating ZSCAN21.

Lassot I, Mora S, Lesage S, Zieba BA, Coque E, Condroyer C, Bossowski JP, Mojsa B, Marelli C, Soulet C, Tesson C, Carballo-Carbajal I, Laguna A, Mangone G, Vila M, Brice A, Desagher S.

Cell Rep 2018 / vol 25(9) / pages 2484-2496

Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs.

Dufourt J, Trullo A, Hunter J, Fernandez C, Lazaro J, Dejean M, Morales L, Nait-Amer S, Schulz KN, Harrison MM, Favard C, Radulescu O, Lagha M.

Nat Commun 2018 / vol 9(1) / pages 5194

Remembering the past: Mitotic bookmarking in a developing embryo.

Bellec M, Radulescu O, Lagha M.

Curr Opin Syst Biol 2018 / vol 11 / pages 41-49

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair

Kallimasioti-Pazi EM1, Thelakkad Chathoth K1, Taylor GC1, Meynert A1, Ballinger T1, Kelder MJE1, Lalevée S2, Sanli I2, Feil R2, Wood AJ1

PLos Biol 2018 / vol 16(12) / pages e2005595

Cellular Metabolism Is a Major Determinant of HIV-1 Reservoir Seeding in CD4+ T Cells and Offers an Opportunity to Tackle Infection.

Valle-Casuso JC, Angin M, Volant S, Passaes C, Monceaux V, Mikhailova A, Bourdic K, Avettand-Fenoel V, Boufassa F, Sitbon M, Lambotte O, Thoulouze MI, Müller-Trutwin M, Chomont N, Sáez-Cirión A.

Cell Metab 2019 / vol 29(3) / pages 611-626.e5

Thymoquinone Potently Enhances the Activities of Classically Activated Macrophages Pulsed with Necrotic Jurkat Cell Lysates and the Production of Antitumor Th1-/M1-Related Cytokines.

Miliani M, Nouar M, Paris O, Lefranc G, Mennechet F, Aribi M.

J Interferon Cytokine Res. 2018 / vol 38 (12)

SUMO Safeguards Somatic and Pluripotent Cell Identities by Enforcing Distinct Chromatin States.

Cossec JC, Theurillat I, Chica C, Búa Aguín S, Gaume X, Andrieux A, Iturbide A, Jouvion G, Li H, Bossis G, Seeler JS, Torres-Padilla ME, Dejean A.

Cell Stem Cell 2018 / vol 23 (5) / pages 742-757

SOX9 has distinct regulatory roles in alternative splicing and transcription.

Girardot M, Bayet E, Maurin J, Fort P, Roux P, Raynaud P.

Nucleic Acids Res 2018 / vol 2018 / pages 9106-9118

Lysosomal and network alterations in human mucopolysaccharidosis type VII iPSC-derived neurons.

Bayó-Puxan N, Terrasso AP, Creyssels S, Simão D, Begon-Pescia C, Lavigne M, Salinas S, Bernex F, Bosch A, Kalatzis V, Levade T, Cuervo AM, Lory P, Consiglio A, Brito C, Kremer E.

Sci Rep 2018 / vol 8(1) / pages 16644

Thalamocortical and corticothalamic pathways differentially contribute to goal-directed behaviors in the rat.

Alcaraz F, Fresno V, Marchand AR, Kremer EJ, Coutureau E, Wolff M.

Elife 2018 / vol 7 / pages e32517

High-salt-recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies.

Baudement M-O., Cournac A., Court F., Seveno M., Parrinello H., Reynes C., Sabatier R., Bouschet T., Yi Z., Sallis S., Tancelin M., Rebouissou C., Cathala G., Lesne A., Mozziconacci* J., Journot* L. , Forné* T.

Genome Res 2018 / pages 1733-1746

MRTFA augments megakaryocyte maturation by enhancing the SRF regulatory axis.

Rahman NT, Schulz VP, Wang L, Gallagher PG, Denisenko O, Gualdrini F, Esnault C, Krause DS.

Blood Adv. 2018 / vol 2(20) / pages 2018

TRIM17 and TRIM28 antagonistically regulate the ubiquitination and anti-apoptotic activity of BCL2A1.

Lionnard L, Duc P, Brennan MS, Kueh AJ, Pal M, Guardia F, Mojsa B, Damiano MA, Mora S, Lassot I, Ravichandran R, Cochet C, Aouacheria A, Potts PR, Herold MJ, Desagher S*#, Kucharczak J*#

Cell Death Differ. 2019 / vol 26 / pages 902-917

GNIP1 E3 ubiquitin ligase is a novel player in regulating glycogen metabolism in skeletal muscle.

Montori-Grau M, Pedreira-Casahuga R, Boyer-Díaz Z, Lassot I, García-Martínez C, Orozco A, Cebrià J, Osorio-Conles O, Chacón MR, Vendrell J, Vázquez-Carrera M, Desagher S, Jiménez-Chillarón JC, Gómez-Foix AM

Metabolism 2018 / vol 83 / pages 177-187

Parallels between Mammalian Mechanisms of Monoallelic Gene Expression.

Khamlichi AA, Feil R.

Trends Genet 2018 / pages pii: S0168-9525(18)30137-9

Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing.

Shoaib M1, Walter D1, Gillespie PJ2, Izard F3, Fahrenkrog B4, Lleres D5, Lerdrup M1, Johansen JV1, Hansen K1, Julien E3,6, Blow JJ2, Sørensen CS7.

Nat Commun. 2018 / vol 9(1) / pages 3704

A Growing Toolbox to Image Gene Expression in Single Cells: Sensitive Approaches for Demanding Challenges.

Pichon X. , Lagha M. , Mueller F. , Bertrand E.

Mol Cell 2018 / vol 71(3) / pages 468-480

Exogenous LRRK2G2019S induces parkinsonian-like pathology in a nonhuman primate.

Mestre-Francés N, Serratrice N, Gennetier A, Devau G, Cobo S, Trouche SG, Fontès P, Zussy C, De Deurwaerdere P, Salinas S, Mennechet FJ, Dusonchet J, Schneider BL, Saggio I, Kalatzis V, Luquin-Piudo MR, Verdier JM, Kremer EJ

JCI Insight. 2018 / vol 3(14) / pages pii: 98202

Humoral immune response to adenovirus induce tolerogenic bystander dendritic cells that promote generation of regulatory T cells.

Tran TTP, Eichholz K, Amelio P, Moyer C, Nemerow GR, Perreau M, Mennechet FJD, Kremer EJ

PLoS Pathog. 2018 / vol 14(8) / pages e1007127

Developmental differences between neonatal and adult human erythropoiesis.

Yan H, Hale J, Jaffray J, Li J, Wang Y, Huang Y, An X, Hillyer C, Wang N, Kinet S, Taylor N, Mohandas N, Narla A, Blanc L

Am J Hematol. 2018 / vol 93(4) / pages 494-503

Probabilistic analysis of recurrence plots generated by fractional Gaussian noise

Ramdani S, Bouchara F, Lesne A.

Chaos 2018 / vol 28(8) / pages 085721

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response.

Lecellier CH*, Wasserman WW, Mathelier A*.

Genetics 2018 / vol 209(4) / pages Genetics. 2018 Aug;209(4):1055-1071. doi: 10.1534/genetics.118.301116.

Single-cell mapping of the thymic stroma identifies IL-25-producing tuft epithelial cells.

Bornstein C, Nevo S, Giladi A, Kadouri N, Pouzolles M, Gerbe F, David E, Machado A, Chuprin A, Toth B, Goldberg O, Itzkovitz S, Taylor N, Jay P, Zimmermann VS, Abramson J, Amit I

Nature. 2018 / vol 559(7715) / pages 622-626

The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones.

Maurizy C., Quinternet M., Abel Y., Verheggen C.,. Santo P E, Bourguet M., Paiva A.C.F., Bragantini B., Chagot M-E., Robert M-C., Abeza C., Fabre P., Fort P., Vandermoere F, Sousa P.M. F., Rain J-C., Charpentier B., Bandeiras T-M., Cianférani S., Pradet-Balade B., Manival X., Bertrand E.

Nat Commun 2018 / vol 9(1) / pages 2093

Environmental effects on chromatin repression at imprinted genes and endogenous retroviruses.

Pathak R. , Feil R.

Curr Opin Chem Biol 2018 / vol 45 / pages 139-147

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response.

Lecellier, C.H. , Wasserman W.W., Mathelier, A.

Genetics 2018 June 5 / pages pii: genetics.301116.2018.

Neutrophils are essential for induction of vaccine-like effects by antiviral monoclonal antibody immunotherapies.

Naranjo-Gomez M, Lambour J, Piechaczyk M, Pelegrin M.

JCI Insight. 2018 / vol 3(9) / pages pii: 97339

DUOX2-mediated production of reactive oxygen species induces epithelial mesenchymal transition in 5-fluorouracil resistant human colon cancer cells.

Kang KA, Ryu YS, Piao MJ, Shilnikova K, Kang HK, Yi JM, Boulanger M, Paolillo R, Bossis G, Yoon SY, Kim SB & Hyun JW

Redox Biol. 2018 / vol 17 / pages 224-235

Meg3 Non-coding RNA Expression Controls Imprinting by Preventing Transcriptional Upregulation in cis.

Sanli, I.*, Lalevée, S.*, Camissa, M., Perrin, A., Rage, F., Riccio, A., Llères, D., Bertrand, E., Feil, R.

Cell Rep 2018 / vol 23(2) / pages 337-348

Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome.

Iacono, G., Dubos, A., Méziane, H., Benevento, M., Habibi, E., Mandoli, A., Herault, Y., Feil, R. Riet, F., Selloum, M., Zhou, H., Kleefstra, T., van Bokhoven, H., Kasri, N., Stunnenberg, H.G.

Nucleic Acids Res. 2018 Mar 15

The PAQosome, an R2TP-Based Chaperone for Quaternary Structure Formation

Walid A Houry 1 , Edouard Bertrand 2 , Benoit Coulombe 3

Trends Biochem Sci 2018 / vol 43 (1) / pages 4-9

Probing Instructions for Expression Regulation in Gene Nucleotide Compositions

Chloé Bessière 1 2 , May Taha 1 2 3 , Florent Petitprez 1 2 , Jimmy Vandel 1 4 , Jean-Michel Marin 1 3 , Laurent Bréhélin 1 4 , Sophie Lèbre 1 3 5 , Charles-Henri Lecellier 1 2

PLoS Comput Biol 2018 / vol 14 (1) / pages e1005921

Differential Long Non-Coding RNA Expression Profiles in Human Oocytes and Cumulus Cells

Julien Bouckenheimer 1 , Patricia Fauque 2 , Charles-Henri Lecellier 3 , Céline Bruno 2 , Thérèse Commes 1 , Jean-Marc Lemaître 1 4 , John De Vos 5 6 7 , Said Assou 8

Sci Rep 2018 / vol 8 (1) / pages 2202

Targeting the SUMO pathway primes all-trans retinoic acid-induced differentiation of non-promyelocytic acute myeloid leukemias.

Baik, H., Hossein, S-M., Kowalczyk, J., Boulanger, M., Zaghdoudi, S., Salem, T., Sarry, J-E., Hicheri, Y., Cartron, G., Piechaczyk, M(*). and Bossis, G.(*).

Cancer Res 2018 / vol Feb 27

The PDK1 Inhibitor Dichloroacetate Controls Cholesterol Homeostasis Through the ERK5/MEF2 Pathway.

Ul Haq Khan A, Allende-Vega N, Gitenay D, Gerbal-Chaloin S, Gondeau C, Vo DN, Belkahla S, Orecchioni S, Talarico G, Bertolini F , Stanojevic MB, Valdivielso JM, Bejjani F, Jariel-Encontre I, Lopez-Mejia I, Fajas L, Lecellier CH, Hernandez J, Daujat M, and Villalba M.

Sci Rep 2018 / vol 7(1) / pages 10654

Regulation of the positive transcriptional effect of PLZF through a non-canonical EZH2 activity

Koubi M, Poplineau M, Vernerey J, Nguyen L, Tiberi G, El-Kaoutari A, Garciaz S, Andrau JC, Maqbool MA, Guillouf C, Saurin, A, Duprez, E

Nucleic Acids Res. 2018 / vol 46 (7) / pages 3339-3350

Long-Term Imaging of DNA Damage and Cell Cycle Progression in Budding Yeast Using Spinning Disk Confocal Microscopy

Montecchi R, Schwob E.

Methods Mol Biol. 2018 / vol 1672 / pages 527-536

Tyrosine-1 of RNA Polymerase II CTD Controls Global Termination of Gene Transcription in Mammals.

Shah N**, Maqbool MA**, Yahia Y, Zine El Aabidine A, Esnault C, Fonré I, Decker TM, Martin D, Schuller R, Krebs S, Blum H, Ihmof A, Eick D*, Andrau JC*

Mol Cell. 2018 / vol 69 / pages p48–61.e6

Probing instructions for expression regulation in gene nucleotide compositions

Bessière C, Taha M, Petitprez F, Vandel J, Marin JM, Bréhélin L, Lèbre S, Lecellier CH.

PLoS Comput Biol 2018

Publications

Publication Archives

Non-Cell Cycle Functions of the CDK Network in Ciliogenesis: Recycling the Cell Cycle Oscillator

The E3 Ubiquitin Ligases TRIM17 and TRIM41 Modulate α-Synuclein Expression by Regulating ZSCAN21.

Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs.

Remembering the past: Mitotic bookmarking in a developing embryo.

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair

Cellular Metabolism Is a Major Determinant of HIV-1 Reservoir Seeding in CD4+ T Cells and Offers an Opportunity to Tackle Infection.

Thymoquinone Potently Enhances the Activities of Classically Activated Macrophages Pulsed with Necrotic Jurkat Cell Lysates and the Production of Antitumor Th1-/M1-Related Cytokines.

SUMO Safeguards Somatic and Pluripotent Cell Identities by Enforcing Distinct Chromatin States.

SOX9 has distinct regulatory roles in alternative splicing and transcription.

Lysosomal and network alterations in human mucopolysaccharidosis type VII iPSC-derived neurons.

Thalamocortical and corticothalamic pathways differentially contribute to goal-directed behaviors in the rat.

High-salt-recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies.

MRTFA augments megakaryocyte maturation by enhancing the SRF regulatory axis.

TRIM17 and TRIM28 antagonistically regulate the ubiquitination and anti-apoptotic activity of BCL2A1.

GNIP1 E3 ubiquitin ligase is a novel player in regulating glycogen metabolism in skeletal muscle.

Parallels between Mammalian Mechanisms of Monoallelic Gene Expression.

Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing.

A Growing Toolbox to Image Gene Expression in Single Cells: Sensitive Approaches for Demanding Challenges.

Exogenous LRRK2G2019S induces parkinsonian-like pathology in a nonhuman primate.

Humoral immune response to adenovirus induce tolerogenic bystander dendritic cells that promote generation of regulatory T cells.

Developmental differences between neonatal and adult human erythropoiesis.

Probabilistic analysis of recurrence plots generated by fractional Gaussian noise

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response.

Single-cell mapping of the thymic stroma identifies IL-25-producing tuft epithelial cells.

The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones.

Environmental effects on chromatin repression at imprinted genes and endogenous retroviruses.

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response.

Neutrophils are essential for induction of vaccine-like effects by antiviral monoclonal antibody immunotherapies.

DUOX2-mediated production of reactive oxygen species induces epithelial mesenchymal transition in 5-fluorouracil resistant human colon cancer cells.

Meg3 Non-coding RNA Expression Controls Imprinting by Preventing Transcriptional Upregulation in cis.

Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome.

The PAQosome, an R2TP-Based Chaperone for Quaternary Structure Formation

Probing Instructions for Expression Regulation in Gene Nucleotide Compositions

Differential Long Non-Coding RNA Expression Profiles in Human Oocytes and Cumulus Cells

Targeting the SUMO pathway primes all-trans retinoic acid-induced differentiation of non-promyelocytic acute myeloid leukemias.

The PDK1 Inhibitor Dichloroacetate Controls Cholesterol Homeostasis Through the ERK5/MEF2 Pathway.

Regulation of the positive transcriptional effect of PLZF through a non-canonical EZH2 activity

Long-Term Imaging of DNA Damage and Cell Cycle Progression in Budding Yeast Using Spinning Disk Confocal Microscopy

Tyrosine-1 of RNA Polymerase II CTD Controls Global Termination of Gene Transcription in Mammals.

Probing instructions for expression regulation in gene nucleotide compositions