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Publication Archives

Unbiased Interrogation of 3D Genome Topology Using Chromosome Conformation Capture Coupled to High-Throughput Sequencing (4C-Seq)

Brouwer RW, van den Hout MC, van IJcken WF, Soler E, Stadhouders R.

Methods Mol Biol. 2017

miR-125b controls monocyte adaptation to inflammation through mitochondrial metabolism and dynamics.

Duroux-Richard I, Roubert C, Ammari M, Présumey J, Grün JR, Häupl T, Grützkau A, Lecellier CH, Boitez V, Codogno P7, Escoubet J, Pers YM, Jorgensen C, Apparailly F.

Blood. 2016 / vol 128(26) / pages 3125-3136

Metabolic regulation of hematopoietic stem cell commitment and erythroid differentiation

Oburoglu, L.; Romano, M.; Taylor, N.; Kinet, S.

Curr Opin Hematol 2016 / vol 23 / pages 198-205

Dynamics of Nucleosome Positioning Maturation following Genomic Replication

Vasseur, P.; Tonazzini, S.; Ziane, R.; Camasses, A.; Rando, O. J.; Radman-Livaja, M.

Cell Rep 2016 / vol 16 / pages 2651-65

Recurrence plots of discrete-time Gaussian stochastic processes

Ramdani, S.; Bouchara, F.; Lagarde, J.; Lesne, A.

Physica D-Nonlinear Phenomena 2016 / vol 330 / pages 17-31

Structural basis for the recognition of spliceosomal SmN/B/B’ proteins by the RBM5 OCRE domain in splicing regulation

Mourão A, Bonnal S, Soni K, Warner L, Bordonné R, Valcárcel J, Sattler M.

Elife. 2016

Intestinal epithelial tuft cells initiate type 2 mucosal immunity to helminth parasites

Gerbe, F.; Sidot, E.; Smyth, D. J.; Ohmoto, M.; Matsumoto, I.; Dardalhon, V.; Cesses, P.; Garnier, L.; Pouzolles, M.; Brulin, B.; Bruschi, M.; Harcus, Y.; Zimmermann, V. S.; Taylor, N.; Maizels, R. M.; Jay, P.

Nature 2016 / vol 529 / pages 226-30

Converting monoclonal antibody-based immunotherapies from passive to active: bringing immune complexes into play

Lambour, J.; Naranjo-Gomez, M.; Piechaczyk, M.; Pelegrin, M.

Emerg Microbes Infect 2016 / vol 5 / pages e92

E4F1-mediated control of pyruvate dehydrogenase activity is essential for skin homeostasis

Goguet-Rubio§, P.; Seyran§, B.; Gayte, L.; Bernex, F.; Sutter, A.; Delpech, H.; Linares, L. K.; Riscal, R.; Repond, C.; Rodier, G.; Kirsh, O.; Touhami, J.; Noel, J.; Vincent, C.; Pirot, N.; Pavlovic, G.; Herault, Y.; Sitbon, M.; Pellerin, L.; Sardet, C.; Lacroix*, M.; Le Cam*, L.

Proc Natl Acad Sci U S A 2016 / vol 113 / pages 11004-9

Cell surface Glut1 levels distinguish human CD4 and CD8 T lymphocyte subsets with distinct effector functions

Cretenet, G.; Clerc, I.; Matias, M.; Loisel, S.; Craveiro, M.; Oburoglu, L.; Kinet, S.; Mongellaz, C.; Dardalhon, V.; Taylor, N.

Sci Rep 2016 / vol 6 / pages 24129

XPR1 mutations are a rare cause of primary familial brain calcification

Anheim§, M.; Lopez-Sanchez§, U.; Giovannini, D.; Richard, A. C.; Touhami, J.; N'Guyen, L.; Rudolf, G.; Thibault-Stoll, A.; Frebourg, T.; Hannequin, D.; Campion, D.; Battini*, J. L.; Sitbon*, M.; Nicolas*, G.

J Neurol 2016 / vol 263 / pages 1559-64

Network Modeling of Crohn’s Disease Incidence

Victor, J. M.; Debret, G.; Lesne, A.; Pascoe, L.; Carrivain, P.; Wainrib, G.; Hugot, J. P.

PLoS One 2016 / vol 11 / pages e0156138

Enhancers and their dynamics during hematopoietic differentiation and emerging strategies for therapeutic action

Cico A, Andrieu-Soler C, Soler E.

FEBS Lett. 2016

Retrograde optogenetic characterization of the pontospinal module of the locus coeruleus with a canine adenoviral vector

Li, Y.; Hickey, L.; Perrins, R.; Werlen, E.; Patel, A. A.; Hirschberg, S.; Jones, M. W.; Salinas, S.; Kremer, E. J.; Pickering, A. E.

Brain Res 2016

In Vitro Corticogenesis from Embryonic Stem Cells Recapitulates the In Vivo Epigenetic Control of Imprinted Gene Expression

Bouschet, T.; Dubois, E.; Reynes, C.; Kota, S. K.; Rialle, S.; Maupetit-Mehouas, S.; Pezet, M.; Le Digarcher, A.; Nidelet, S.; Demolombe, V.; Cavelier, P.; Meusnier, C.; Maurizy, C.; Sabatier, R.; Feil, R.; Arnaud, P.; Journot, L.; Varrault, A.

Cereb Cortex 2016

Physics of cancer: the role of chromosome conformation and epigenetics in cancer progression multiscale insights on cancer progression

Naimark, O. B.; Nikitiuk, A. S.; Baudement, M. O.; Forne, T.; Lesne, A.

AIP Conference Proceedings 2016 / vol 1760 / pages 20051

Evaluation of helper-dependent canine adenovirus vectors in a 3D human CNS model

Simao, D.; Pinto, C.; Fernandes, P.; Peddie, C. J.; Piersanti, S.; Collinson, L. M.; Salinas, S.; Saggio, I.; Schiavo, G.; Kremer, E. J.; Brito, C.; Alves, P. M.

Gene Ther 2016 / vol 23 / pages 86-94

Coxsackievirus Adenovirus Receptor Loss Impairs Adult Neurogenesis, Synapse Content, and Hippocampus Plasticity

Zussy, C.; Loustalot, F.; Junyent, F.; Gardoni, F.; Bories, C.; Valero, J.; Desarmenien, M. G.; Bernex, F.; Henaff, D.; Bayo-Puxan, N.; Chen, J. W.; Lonjon, N.; de Koninck, Y.; Malva, J. O.; Bergelson, J. M.; di Luca, M.; Schiavo, G.; Salinas, S.; Kremer, E. J.

J Neurosci 2016 / vol 36 / pages 9558-71

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting

Tantale, K.; Mueller, F.; Kozulic-Pirher, A.; Lesne, A.; Victor, J. M.; Robert, M. C.; Capozi, S.; Chouaib, R.; Backer, V.; Mateos-Langerak, J.; Darzacq, X.; Zimmer, C.; Basyuk, E.; Bertrand, E.

Nat Commun 2016 / vol 7 / pages 12248

Membrane Dynamics and Signaling of the Coxsackievirus and Adenovirus Receptor

Loustalot, F.; Kremer, E. J.; Salinas, S.

Int Rev Cell Mol Biol 2016 / vol 322 / pages 331-62

Immune-Complexed Adenovirus Induce AIM2-Mediated Pyroptosis in Human Dendritic Cells

Eichholz, K.; Bru, T.; Tran, T. T.; Fernandes, P.; Welles, H.; Mennechet, F. J.; Manel, N.; Alves, P.; Perreau, M.; Kremer, E. J.

PLoS Pathog 2016 / vol 12 / pages e1005871

Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells

Pichon, X.; Bastide, A.; Safieddine, A.; Chouaib, R.; Samacoits, A.; Basyuk, E.; Peter, M.; Mueller, F.; Bertrand, E.

J Cell Biol 2016 / vol 214 / pages 769-81

Disruption of snRNP biogenesis factors Tgs1 and pICln induces phenotypes that mirror aspects of SMN-Gemins complex perturbation in Drosophila, providing new insights into spinal muscular atrophy

Borg RM, Fenech Salerno B, Vassallo N, Bordonne R, Cauchi RJ.

Neurobiol Dis. 2016

Direct non transcriptional role of NF-Y in DNA replication

Benatti, P.; Belluti, S.; Miotto, B.; Neusiedler, J.; Dolfini, D.; Drac, M.; Basile, V.; Schwob, E.; Mantovani, R.; Blow, J. J.; Imbriano, C.

Biochim Biophys Acta 2016 / vol 1863 / pages 673-85

The physics of epigenetics

Cortini, R.; Barbi, M.; Care, B. R.; Lavelle, C.; Lesne, A.; Mozziconacci, J.; Victor, J. M.

Reviews of Modern Physics 2016 / vol 88

Production and Purification of Recombinant SUMOylated Proteins Using Engineered Bacteria

Brockly, F.; Piechaczyk, M.; Bossis, G.

Methods Mol Biol 2016 / vol 1475 / pages 55-65

A proliferation inducing ligand (APRIL) promotes IL-10 production and regulatory functions of human B cells

Hua C, Audo R, Yeremenko N, Baeten D, Hahne M, Combe B, Morel J, Daïen C.

J Autoimmun. 2016

Solange Desagher and Jean-Claude Martinou: Executioners of Cell Death

Desagher, S.; Martinou, J. C.

Trends Cell Biol 2016 / vol 26 / pages 560-2

Single-molecule analysis of DNA replication reveals novel features in the divergent eukaryotes Leishmania and Trypanosoma brucei versus mammalian cells

Stanojcic, S.; Sollelis, L.; Kuk, N.; Crobu, L.; Balard, Y.; Schwob, E.; Bastien, P.; Pages, M.; Sterkers, Y.

Sci Rep 2016 / vol 6 / pages 23142

Searching for Common Mammalian Retroviruses in Pediatric Idiopathic Diseases

Jeziorski, E.; Foulongne, V.; Ludwig, C.; Louhaem, D.; Rodiere, M.; Sitbon*, M.; Courgnaud*, V.

Viruses 2016 / vol 8 / pages 86

EHMT2 directs DNA methylation for efficient gene silencing in mouse embryos

Auclair, G., Borgel, J., Sanz, L. A., Vallet, J., Guibert, S., Dumas, M., Cavelier, P., Girardot, M., Forne, T., Feil, R.* and Weber, M.*

Genome Res 2016 / vol 26 / pages 192-202

Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells

Soucie, E. L.; Weng, Z.; Geirsdottir, L.; Molawi, K.; Maurizio, J.; Fenouil, R.; Mossadegh-Keller, N.; Gimenez, G.; VanHille, L.; Beniazza, M.; Favret, J.; Berruyer, C.; Perrin, P.; Hacohen, N.; Andrau, J. C.; Ferrier, P.; Dubreuil, P.; Sidow, A.; Sieweke, M. H.

Science 2016 / vol 351 / pages aad5510

ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells

Anvar, Z.; Cammisa, M.; Riso, V.; Baglivo, I.; Kukreja, H.; Sparago, A.; Girardot, M.; Lad, S.; De Feis, I.; Cerrato, F.; Angelini, C.; Feil, R.; Pedone, P. V.; Grimaldi, G.; Riccio, A.

Nucleic Acids Res 2016 / vol 44 / pages 1118-32

Imprinting control regions (ICRs) are marked by mono-allelic bivalent chromatin when transcriptionally inactive

Maupetit-Mehouas, S.; Montibus, B.; Nury, D.; Tayama, C.; Wassef, M.; Kota, S. K.; Fogli, A.; Cerqueira Campos, F.; Hata, K.; Feil, R.; Margueron, R.; Nakabayashi, K.; Court, F.; Arnaud, P.

Nucleic Acids Res 2016 / vol 44 / pages 621-35

Do cell-autonomous and non-cell-autonomous effects drive the structure of tumor ecosystems?

Tissot, T.; Ujvari, B.; Solary, E.; Lassus, P.; Roche, B.; Thomas, F.

Biochim Biophys Acta 2016 / vol 1865 / pages 147-54

Regulatory links between imprinted genes: evolutionary predictions and consequences

Patten, M. M.; Cowley, M.; Oakey, R. J.; Feil, R.

Proc Biol Sci 2016 / vol 283

Hematopoietic stem cell lineage specification

Pouzolles, M.; Oburoglu, L.; Taylor, N.; Zimmermann, V. S.

Curr Opin Hematol 2016 / vol 23 / pages 311-7

SRF co-factors control the balance between cell proliferation and contractility

Gualdrini*, F.; Esnault, C.; Horswell, S.; Stewart, A.; Matthews, N.; Treisman, R.

Mol Cell 2016 / vol 64 (6) / pages 1048-1061

The in vivo dynamics of TCERG1, a factor that couples transcriptional elongation with splicing.

Noemí Sánchez-Hernández 1 , Stéphanie Boireau 2 , Ute Schmidt 2 , Juan Pablo Muñoz-Cobo 1 , Cristina Hernández-Munain 3 , Edouard Bertrand 2 , Carlos Suñé 1

RNA 2016 / vol 22 (4) / pages 571-82

A Single-Molecule View of Transcription Reveals Convoys of RNA Polymerases and Multi-Scale Bursting

Katjana Tantale 1 , Florian Mueller 2 , Alja Kozulic-Pirher 1 , Annick Lesne 1 3 , Jean-Marc Victor 1 3 , Marie-Cécile Robert 1 , Serena Capozi 1 , Racha Chouaib 1 , Volker Bäcker 4 , Julio Mateos-Langerak 4 , Xavier Darzacq 5 , Christophe Zimmer 2 , Eugenia Basyuk 1 , Edouard Bertrand 1

Nat Commun 2016 / vol 7 / pages 12248